Eric R. Tkaczyk, Cheng Frank Zhong, Jing Yong Ye, Andrzej Myc, Thommey Thomas, Zhengyi Cao, Raimon Duran-Struuck, Kathryn E. Luker, Gary D. Luker, Theodore B. Norris and James R. Baker Jr. “In vivo monitoring of multiple circulating cell populations using two-photon flow cytometry”, Optics Communication, 281, 888-894 (2008).
Thommey P. Thomas, Jing Yong Ye, Yu-Chung Chang, Alina Kotlyar, Zhengyi Cao, Istvan J. Majoros, Theodore B. Norris and James R. Baker, Jr., “Investigation of tumor cell targeting of a dendrimer nanoparticle using a double-clad optical fiber probe”, Journal of Biomedical Optics, in press, 2008
Cheng Frank Zhong, Eric R. Tkaczyk, Jing Yong Ye, Andrzej Myc, Thommey Thomas, Zhengyi Cao, Raimon Duran-Struuck, Kathryn E. Luker, Gary D. Luker, Theodore B. Norris and James R. Baker, Jr. “Quantitative Two-Photon Flow Cytometry – in Vitro and in Vivo”, Journal of Biomedical Optics, in press, 2008
Christine Tse, Marwa J. Zohdy, Jing Yong Ye, and Matthew O’Donnell, “Precision and penetration depth limitations of subsurface photodisruption in porcine skin tissue with infrared femtosecond laser pulses”, IEEE Transactions on Biomedical Engineering, in press 2008.
J. Y. Ye, C. J. Divin, J. R. Baker, and T. B. Norris, “Whole spectrum fluorescence detection with ultrafast white light excitation,” Opt. Express 15, 10439-10445 (2007)
Eric R. Tkaczyk, Jing Yong Ye, Andrzej Myc, Steve Katnik, Kathryn E. Luker, Gary D. Luker, James R. Baker, Jr., &Theodore B. Norris, “Extended Cavity Laser Enhanced Two-Photon Flow Cytometry”, submitted to Journal of Biomedical Optics, 2007
Thommey P. Thomas, Rameshwar Shukla, Alina Kotlyar, Bradley Liang, Jing Yong Ye, Theodore B. Norris and James R. Baker, Jr. “Targeting of epidermal growth factor receptor using EGF-conjugated dendrimers”, Bioconjugate Chemistry, in press, 2007.
M.J. Zohdy, C. Tse, J.Y. Ye, M. O’Donnell, “Acoustic estimation of thermal distribution in the vicinity of femtosecond laser-induced optical breakdown,” IEEE Transactions on Biomedical Engineering, 53, 2347-2355 (2006).
Marwa J. Zohdy, Christine Tse, Jing Yong Ye, and Matthew O’Donnell, “Optical and acoustic detection of laser-generated microbubbles in single cells”, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 53, 117-125 (2006).
Christine Tse, Marwa J. Zohdy, Jing Yong Ye, Theodore B. Norris, Lajos P. Balogh, Kyle W. Hollman, and Matthew O’Donnell, “Acoustic Detection of Controlled Laser-Induced Microbubble Creation in Gelatin”, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 52, 1962-1969 (2005).
Jing Yong Ye, Christine Tse, Marwa J. Zohdy, Guoqing Chang, Kyle W. Hollman, Matthew O’Donnell, James R. Baker, Jr., Theodore B. Norris, “Trapping cavitation bubbles with a self-focused laser beam”, Opt. Lett., 29, 2136-2138 (2004)
Thommey P. Thomas, Anil K. Patri, Andrzej Myc, Mon Thiri Myaing, Jing Yong Ye, Theodore B. Norris, and James R. Baker Jr., “In Vitro Targeting of Synthesized Antibody-Conjugated Dendrimer Nanoparticles”, Biomacromolecules 5, 2269-2274 (2004).
T. Thomas, M. T. Myaing, J. Y. Ye, K. Candido, A. Kotlyar, J. Beals, P. Cao, B. Keszler, A. Patri, T. B. Norris, J. Baker, Jr. “Detection and analysis of tumor fluorescence using a two-photon optical fiber probe”, Biophysics Journal, 86, 3959 (2004).
Mon Thiri Myaing, Jing Yong Ye, Theodore B. Norris, T. Thomas, A. Kotylar, A. Patri J. Baker, Jr. W.J. Wadsworth, R.M. Percival, G. Bouwmans, J.C. Knight, and P.St.J. Russell, “Enhanced Two-photon Biosensing with Double-Clad Photonic Crystal Fibers”, Opt. Lett., 28, 1224 (2003).
V. P. Biju, J.Y. Ye, and M. Ishikawa, “Spatial heterogeneity in a polymer thin film probed by single molecules”, J. Phys. Chem. B107, 10729-10735 (2003).
S. M. Milas, J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., K. W. Hollman, S. Emelianov, M. O’Donnell, “Acoustic Characterization of Enhanced Laser-Induced Optical Breakdown Using Silver/Dendrimer Nanocomposites”, Appl. Phys. Lett. 82, 994 (2003).
S. M. Milas, J. Y. Ye, T. B. Norris, K. W. Hollman, S. Emelianov, M. O’Donnell, “Acoustic Characterization of Microbubble Dynamics in Laser-Induced Optical Breakdown”, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 50, 517 (2003).
J. Y. Ye, M. T. Myaing, T. B. Norris, T. Thomas and J. Baker Jr., “Biosensing based on two-photon fluorescence measurements through optical fibers”, Opt. Lett. 27, 1412 (2002).
Mitsuru Ishikawa, Yoshihiro Maruyama, Jing Yong Ye and Masayuki Futamata, “Single-molecule imaging and spectroscopy of adenine and an analog of adenine using surface-enhanced Raman scattering and fluorescence”, J. Luminescence 98, 81 (2002)
Ishikawa M, Maruyama Y, Ye JY, Futamata M, “Single-molecule imaging and spectroscopy using fluorescence and surface-enhanced Raman scattering”, J. Bio. Phys. 28, 573-585 (2002)
H. Inouye, M. Arakawa, J. Y. Ye; T. Hattori, H. Nakatsuka, K. Hirao, “Optical properties of a total-reflection-type one-dimensional photonic crystal”, IEEE J. Quantum Electronics 38, 867 (2002)
J. Y. Ye, L. Balogh, and T. B. Norris, “Enhancement of Laser-Induced Breakdown Using Metal/Dendrimer Nanocomposites”, Appl. Phys. Lett. 80, 1713 (2002).
L. Sherman, J. Y. Ye, O. Albert, and T. B. Norris, “Adaptive Correction of Depth Induced Aberrations in Multiphoton Confocal Microscopy using a Deformable Mirror”, J. Microscopy 206, 65 (2002).
Yogi, T. Kawakami, M. Yamauchi, J. Y. Ye, and M. Ishikawa, “On-Demand Droplet Spotter for Preparing Pico-to Femtoliter Droplets on Surfaces”, Anal. Chem. 73, 1896 (2001).
J. Y. Ye, K. Umemura, M. Ishikawa, and R. Kuroda, “Atomic Force Microscopy of DNA Molecules Stretched by Spin-Coating Technique”, Anal. Biochem. 281, 21 (2000).
J. Y. Ye, Y. Yamane, M. Yamauchi, H. Nakatsuka, and M. Ishikawa, “Direct Observation of Interactions of Single Fluorescent Nucleotide Analogue Molecules with DNA Polymerase I”, Chem. Phys. Lett. 320, 607 (2000).
J. Y. Ye, Y. Yamane, O. Yogi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa, “Enhancement of Two-Photon Excited Fluorescence Using One-Dimensional Photonic Crystals”, Appl. Phys. Lett. 75, 3605 (1999).
M. Yamauchi, J. Y. Ye, O. Yogi, and M. Ishikawa, “Single Molecules on Quartz Contrasting Highly-Ordered Single Molecules ala Silicon”, Chem. Lett. 735 (1999).
M. Ishikawa, J. Y. Ye, Y. Maruyama, and H. Nakatsuka, “Triphenylmethane Dyes Revealing Heterogeneity of their nanoenvironment: Femtosecond, Picosecond, and Single-Molecule Studies”, J. Phys. Chem. A 103, 4319 (1999).
J. Y. Ye, M. Yamauchi, O. Yogi, and M. Ishikawa, “Spectroscopic Properties of 2′-(or-3′)-O-(2, 4, 6-Trinitrophenyl) Adenosine 5′-Triphosphate Revealed by Time-Resolved Fluorescence Spectroscopy”, J. Phys. Chem. B 103, 2812 (1999).
M. Ishikawa, O. Yogi, J. Y. Ye, and T. Yasuda, “Grouping of independent single molecules on silicon surfaces”, Anal. Chem. 70, 5198 (1998).
J. Y. Ye, M. Ishikawa, O. Yogi, T. Okada, and Y. Maruyama, “Bimodal Site Distribution of a Polymer Film Revealed by Flexible Single-Molecule Probes”, Chem. Phys. Lett. 288, 885 (1998).
J. Y. Ye, T. Hattori, H. Nakatsuka, Y. Maruyama, and M. Ishikawa, “Microscopic Dynamics of Glass Transition Investigated by Time-Resolved Fluorescence Measurements of Doped Chromophores”, Phys. Rev. B 56, 5286 (1997).
H. Nakatsuka, J. Y. Ye, T. Hattori, Y. Maruyama and M.Ishikawa, “Microscopic Study of Glass Transition: Time-Resolved Fluorescence Measurements of Doped Dye Molecules”, Prog. Theor. Phys., suppl. 126, 433 (1997).
J. Y. Ye, T. Hattori, H. Inouye, H. Ueta, H. Nakatsuka, Y. Maruyama, and M. Ishikawa, “Glass Transition of Associated Solvents Studied by Fluorescence Measurement of Doped Chromophores”, Phys. Rev. B 53, 8349 (1996).
K. M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, H. Sumi and H. Nakatsuka, “Diffusive Torsional Dynamics of Malachite Green Molecules in Solid Matrices Probed by Fluorescence Decay”, J. Chem. Phys. 103, 6414 (1995).
K. M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, and H. Nakatsuka, “Local Dynamics in Solid Matrices Investigated by Malachite Green Optical Microprobes”, J. Luminescence 64, 135 (1995).
J. Y. Ye, M. S. Zhan and S. K. Zhou, “Gain Due to Level-Dependent Collisions”, Phys. Rev. A 48, 2256 (1993).
J. Y. Ye, M. S. Zhan and S. K. Zhou, “Light Amplification by the Effect of Velocity Redistribution of Particles due to the Level Dependence of Collision Cross Sections”, Phys. Lett. A 166, 352 (1992)
J. Y. Ye, L. S. Yang and Y. Q. Lu, “Rate Equation Theory of Light-Induced Drift”, The Chinese Journal of Atom and Mol. Phys. 9, 2125 (1992).
J. Y. Ye, M. S. Zhan, and S. K. Zhou, “A New Model on Light Amplification without Population Inversion”, The Chinese Journal of Quantum Electronics, 9, 65 (1992).